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Keiichiro Ono (UC, San Diego )
Cytoscape was a stand-alone desktop application designed primarily for point-and-click GUI operations. However, as biological data sets grow, biologists need to manage large-scale data analysis and visualization workflows which require some sort of automation. To solve this problem, we have developed a Cytoscape App called cyREST, a RESTful API module for Cytoscape. In my poster, I will present a portable and scalable network data analysis and visualization workflow using cyREST, Jupyter, and Docker.https://github.com/idekerlab/cyREST/wiki/VIZBI-2015-Tutorial