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Jim Procter, Suzanne Duce, Geoff Barton and the Jalview Authors. (University of Dundee, Dundee, UK.)
Jalview is a standalone and web-based interactive application for the creation, visualization and analysis of multiple sequence alignments. Core sequence, alignment, protein and RNA 2D and 3D molecular structure and phlyogenetic tree visualization capabilities are provided as a Java applet with javascript API, and the desktop application interfaces with a range of bioinformatics databases and analysis services to support in-depth analysis and the creation of publication quality figures.