VISUALIZING BIOLOGICAL DATA VIZBI

Wednesday 3 March 2010

08:30 - 09:30 Registration
09:30 - 09:40 Welcome Remarks (Seán O’Donoghue)

Visualization in Magnetic Resonance Imaging
Session Chair: David Shattuck

09:40 - 10:05 Quantitative Tissue Imaging with µ-MRI (Suzanne Duce) PDF Video
10:05 - 10:30 Visualizing Anatomy and Function from MRI Data (Steve Pieper) Powerpoint Video
10:30 - 11:00 Coffee Break
11:00 - 11:30 Visualizing Brain White Matter using Diffusion MRI (Mark Bastin) Powerpoint Video
11:30 - 12:00 Visualization of Cardiovascular Function with MRI at Ultra-Short Timescales (Juergen Schneider) PDF
 
12:00 - 12:30 Poster Fast-forward 'W'
12:30 - 14:00 Lunch Break + Poster Session 'W'

Visualization of Optical Microscopy Data
Session Chairs: Thomas Walter & Jean-Karim Heriche
Session Sponsor: ELIXIR

14:00 - 14:30 2D High-Throughput Microscopy Screens (Anne Carpenter) PDF Video
14:30 - 15:00 High-Throughput & High-Content Quantitative Microscopy Data from Living Cells (Jan Ellenberg)
15:00 - 15:30 Coffee Break
15:30 - 16:00 Querying & Mapping External Data on 3D Image Datasets (Mark Ragan & Nick Hamilton)
16:00 - 16:30 Large Biological Samples Imaged with High-Resolution Microscopy (Pavel Tomancak)
16:30 - 17:00 Spatial Annotation & Query of Embryo Atlas Resources (Richard Baldock)
17:00 - 17:30 Coffee Break
17:30 - 18:30 Keynote: Visualizing Data (Ben Fry) Video
18:30 - 21:00 Dinner

Thursday 4 March 2010

Visualization in Systems Biology
Session Chairs: Anne-Claude Gavin & Nils Gehlenborg
Session Sponsor:ENFIN
09:00 - 09:30 Visualization Approaches for Gene Expression Data (Matthew Hibbs) Powerpoint
09:30 - 10:00 From Spectra to Networks - Visualizing Proteomics Data (Oliver Kohlbacher) PDF Video
10:00 - 10:30 Metabolomics Data (Alexander Goesmann)
10:30 - 11:00 Coffee Break
11:00 - 11:30 Rapid Inference and Re-engineering of Biological Circuits (Nitin Baliga) Powerpoint Video
11:30 - 12:00 Biochemical Networks (Hiroaki Kitano)
 
12:00 - 12:30 Poster Fast-forward 'T'
12:30 - 14:00 Lunch Break + Poster Session 'T'
 
14:00 - 15:00 Keynote: Usability & Evaluation (Chris North) Powerpoint Video
15:00 - 15:30 Coffee Break

Visualization of Sequence Assemblies & Genomes
Session Chair: Cydney Nielsen

15:30 - 16:00 Sequencing & Assembly Finishing (David Gordon)
16:00 - 16:30 Genome Browsers (Ting Wang) Powerpoint Video
16:30 - 17:00 Comparative Genomics (Inna Dubchak) PDF Video
17:00 - 17:30 Coffee Break
17:30 - 18:30 Science & Society Keynote: Communicating Science Visually (Bang Wong)
18:30 - 18:35 VIZBI Prize Award
18:35 - 23:00 Social evening + Dinner + Live music from 'Lily & Co' and 'Rejana Soul'

Friday 5 March 2010

Visualization of Macromolecular Structures
Session Chair: Seán O'Donoghue
09:00 - 09:30 Proteins (Michael Nilges) Keynote Video
09:30 - 10:00 Ligand Binding Sites (Roman Laskowski) Powerpoint
10:00 - 10:30 RNA (Eric Westhof) PDF Video
10:30 - 11:00 Coffee Break
11:00 - 11:30 Molecular Dynamics (Rebecca Wade)
11:30 - 12:00 Electron Microscopy & Multi-scale Assemblies (Helen Saibil) PDF
 
12:00 - 12:30 Poster Fast-forward 'F'
12:30 - 14:00 Lunch Break + Poster Session 'F' (Sponsor:Scottish Bioinformatics Forum)

Visualization of Alignments & Phylogenies
Session Chair: James Procter

14:00 - 14:30 Alignment Visualization (Geoff Barton)
14:30 - 15:00 Gene & Function Evolution (Julie Thompson) Powerpoint
15:00 - 15:30 Coffee Break
15:30 - 16:00 Phylogenetics (Ivica Letunic) Keynote Video
16:00 - 16:30 Concluding Remarks (Session Chairs) PDF Video